Keio University Syllabus and Timetable

SEMINAR B(2)

Lecturer(s)SUZUKI, HARUO
Credit(s)2
Academic Year/Semester2025 Spring
Day/PeriodTue.5
CampusSFC
Class FormatFace-to-face classes (conducted mainly in-person)
Registration Number19012
Faculty/Graduate SchoolPOLICY MANAGEMENT / ENVIRONMENT AND INFORMATION STUDIES
Year Level1, 2, 3, 4
FieldRESEARCH SEMINARS SEMINARS
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LocationSFC;TTCK;Other
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Student Screening
Courses requiring entry to selection should be registered via SOL-A.
*Only students who have a CNS account and who are not students of the Faculty of Policy Studies, Faculty of Environment and Information Studies, Graduate School of Media and Governance, Faculty of Nursing and Medical Care, and Graduate School of Health Management can enter via the system.

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Equipment & SoftwarePC that can remote login to UNIX systems, and give
presentation
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K-Number FPE-CO-05003-311-43
Course AdministratorFaculty/Graduate SchoolFPEPOLICY MANAGEMENT / ENVIRONMENT AND INFORMATION STUDIES
Department/MajorCO
Main Course NumberLevel0Faculty-wide
Major Classification5Research Seminars
Minor Classification00Seminar
Subject Type3Elective subject
Supplemental Course InformationClass Classification3Seminar
Class Format1Face-to-face classes (conducted mainly in-person)
Language of Instruction1Japanese
Academic Discipline43Biology at molecular to cellular levels, and related fields

Course Summary

“Advanced Biosciences” seminars (Arakawa, Kanai, Kuroda, Kono, Sugimoto, Suzuki, Naito and Hirayama) are operated along with Academic Project “Advanced Biosciences” for graduate students.
All members, including faculty members, graduate students, and undergraduate students are involved to research projects.
The seminar(s) to be taken will be announced when students are notified of their permission to enroll."
Please check our website for more details.
https://www.iab.keio.ac.jp/en/index.html

Course Description/Objectives/Teaching Method/Intended Learning Outcome

Microorganisms (such as bacteria and viruses) play crucial roles in various environments, including the human body, buildings, sewage, air, soil, and plants. However, some microorganisms act as causes of infectious diseases, posing a threat to human health. In this study, our goal is to understand the evolution and diversity of microorganisms using bioinformatics and genome sequence analysis techniques, with the aim of applying this knowledge effectively across diverse fields, including medicine, agriculture, and engineering.

The increase in microbial infections can be attributed to factors such as antimicrobial resistance (AMR) in pathogens, as well as social factors like urbanization and human mobility. If no measures are taken, it is predicted that by 2050, infections caused by antimicrobial resistance (AMR) pathogens could result in 10 million deaths worldwide annually, so-called a 'hidden pandemic.' To prepare for the next pandemic, it is crucial to monitor the status of urban microbiomes and share data.

We have been collecting data on microbiomes of urban and built environments in various cities and time periods (e.g., before, during, and after events such as the EXPO and the Olympics and Paralympics, where large-scale movement of human and materials occurs). We submit this data to public databases that can be accessed by anyone without restrictions. These datasets are expected to be effectively utilized in understanding the diversity and dynamics of microorganisms.

The findings of this research are expected to contribute to various fields, including biodiversity, public health, forensic science, architecture, and urban planning.

Research Seminar Theme

Microbial Genomics; Environmental Bioinformatics

Project Theme (next semester)

Analysis of microbiomes of urban and built environments, genomes of antimicrobial-resistant pathogenic bacteria, and mobile genetic elements such as plasmids and viruses.

Active Learning MethodsDescription

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Preparatory Study

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Course Plan

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Method of Evaluation

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Textbooks

- Buffalo, Vince, author: Bioinformatics Data Skills: Reproducible and Robust Research with Open Source Tools. O'Reilly, 2015. https://www.oreilly.com/library/view/bioinformatics-data-skills/9781449367480/
- Paradis, Emmanuel, author: Analysis of Phylogenetics and Evolution with R. 2nd ed. New York : Springer, 2012.

Reference Books

“Seimei to Joho 2024” You can get this at SFC Iota #311.

Lecturer's Comments to Students

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